Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs2261968 chr13:114153181 T/C 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2265140 chr13:114175358 T/C 0.000389 178 24.1 29.5 3.7 KM Plot
PCPG rs2265141 chr13:114175387 G/A 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs2265142 chr13:114177518 T/G 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265143 chr13:114177558 T/G 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265145 chr13:114177851 A/G 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265147 chr13:114179704 G/A 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265148 chr13:114180787 T/C 4.67E-12 177 24.17 30.33 3.32 KM Plot
PCPG rs2265149 chr13:114159397 G/A 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2265150 chr13:114159308 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2265151 chr13:114158976 C/T 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2265154 chr13:114153471 G/T 4.5E-12 177 24.17 29.57 3.32 KM Plot
PCPG rs2265788 chr13:114153348 A/G 0.000416 176 24.23 28.95 3.7 KM Plot
PCPG rs2265789 chr13:114159124 A/C 3.85E-12 178 24.23 29.57 3.32 KM Plot
PCPG rs2265790 chr13:114159404 A/G 3.85E-12 178 24.23 29.57 3.32 KM Plot